PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C013430P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family DBB
Protein Properties Length: 221aa    MW: 23943.7 Da    PI: 6.4008
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C013430P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.18.9e-09343438
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                     +C+ +++ e++ fC  ++  lC+ C l+ H+       H+
  MELO3C013430P1  3 IRCDVCDQTEASVFCYADEAALCHACDLHVHRAnklagkHS 43
                    58******99*********************7666666665 PP

2zf-B_box27.94.9e-095592338
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                     + C+ ++e ++  fC++++  lC++C  ++H+   Ht
  MELO3C013430P1 55 SPPCDICQERRALVFCQQDRAILCRECDISIHETneHT 92
                    678*****************************767765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.011147IPR000315B-box-type zinc finger
PfamPF006437.0E-7344IPR000315B-box-type zinc finger
CDDcd000212.33E-7347No hitNo description
SMARTSM003361.6E-7447IPR000315B-box-type zinc finger
SMARTSM003369.0E-1353100IPR000315B-box-type zinc finger
PROSITE profilePS5011910.13953100IPR000315B-box-type zinc finger
PfamPF006433.3E-75592IPR000315B-box-type zinc finger
CDDcd000214.25E-956100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MKIRCDVCDQ TEASVFCYAD EAALCHACDL HVHRANKLAG KHSRFSLLQP IKKDSPPCDI  60
CQERRALVFC QQDRAILCRE CDISIHETNE HTQKHNRFLL TGVKLSSTCF SYQTSSSSNG  120
CDIDAPMDVK TGSSNASCSK RPKMAAKDQQ ISTSHSAEKA TPPSTSNHLV DQDGQALSDG  180
GSFSTSSISE YLETLPGWCV EEFLDPSAAA AAAAAANRFY *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817980.0LN681798.1 Cucumis melo genomic scaffold, anchoredscaffold00019.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008448066.11e-164PREDICTED: B-box zinc finger protein 20-like isoform X3
SwissprotQ9LQZ73e-59BBX21_ARATH; B-box zinc finger protein 21
TrEMBLA0A0A0K4F81e-146A0A0A0K4F8_CUCSA; Uncharacterized protein
STRINGPOPTR_0004s16810.17e-74(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.12e-55DBB family protein